PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G261700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 261aa    MW: 27046.6 Da    PI: 7.1756
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G261700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.4e-40341341100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p+++r da+ +++yeA+ar+rdPvyG+v+++++lqqq+ 
  Sobic.001G261700.1.p  34 PCGACKFLRRKCVTGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPPHKRLDAVVTVCYEAQARIRDPVYGCVSHVFALQQQVV 122
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l++el +l+ +
  Sobic.001G261700.1.p 123 NLQTELTYLQGH 134
                           ******998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1533135IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3934132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSSSVLGASA GAGGGGSSSS VPSGGVGCGG GGPPCGACKF LRRKCVTGCI FAPYFDSEQG  60
AAHFAAVHKV FGASNVSKLL LQIPPHKRLD AVVTVCYEAQ ARIRDPVYGC VSHVFALQQQ  120
VVNLQTELTY LQGHLSTIEL PTPPPFGAQN QMPMTATFCV SNLPSASSNI IPGTVDVSTV  180
FEPQTQESHW VSLSQQQQQV QQHQFNQQQS VMVGEGPGTG MSGSGAIGGG DLQLLARELL  240
DRHGITAVGS QSQPKPPPFT *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267063e-92AC226706.2 Oryza minuta clone OM__Ba0084M12, complete sequence.
GenBankBT0614313e-92BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467307.11e-147hypothetical protein SORBIDRAFT_01g024400
SwissprotO221313e-69LBD18_ARATH; LOB domain-containing protein 18
TrEMBLC5WNA01e-147C5WNA0_SORBI; Putative uncharacterized protein Sb01g024400
STRINGSb01g024400.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-63LOB domain-containing protein 18